Processed_data

An R-object containing 'nj.pca.snps' and 'pairwise.focal.mim'. pairwise.focal.mim is a matrix with genotypes for all samples at all SNPS used in nj and PCA analyses. 'pairwise.focal.mim' a list containing 'comps' and 'bounds.'
'comps' - itself a list of all pairwise comparisons between focal samples. For each pairwise comparison between focal samples the number of sites compared & differences between two samples in 1kb windows is contained in a matrix. 'bound' a matrix describing the location of each 1 kb region.

一个包含`nj.pca.snps`与`pairwise.focal.mim`的R对象（R object）。`pairwise.focal.mim`兼具两种数据结构：其一为基因型矩阵，存储了邻接归聚法（Neighbor-Joining，简称NJ）与主成分分析（Principal Component Analysis，简称PCA）分析所用全部单核苷酸多态性（Single Nucleotide Polymorphisms，简称SNPs）位点上所有样本的基因型信息；其二为列表结构，内含`comps`与`bounds`两个子项。`comps`为存储所有焦点样本两两比对结果的列表，针对每一组焦点样本的两两比对，其比对位点总数与两组样本在1千碱基（kb）窗口内的差异信息均存储于一个矩阵中。`bounds`则为位置矩阵，用于描述每个1kb区域的基因组位置。