Code and data used in "Designing marine reserve networks to mitigate larval dispersal volatility with the connectivity portfolio effect"

This repository contains the code and data used in "Designing marine reserve networks to mitigate larval dispersal volatility with the connectivity portfolio effect".

The files have been placed inside a .rar to maintain the file structure necessary to run Marxan correctly.

The main file to run the analyses is "Comparing spatial conservation prioritisation run.R" which uses functions from "Comparing spatial conservation prioritisation functions.R".

The main input files are located in data01.Rdata, data02.Rdata, and data03.Rdata, which contain 1. a data frame of planning unit centroids, sizes, and amount of reef habitat, 2. a subset of planning unit data as a matrix, 3-14. migration, probability, and flow larval dispersal matrices, 15-18. larval release dates, 19-34 indices of Oceanic nino index (ONI), El Nino Modoki index (MOD), Dipole Mode Index (DMI), and Pacific Decadal Oscillation (PDO) of coral trout, snapper, rabbitfish, and octopus.