Angus Sequence Data: Animal 44993
收藏agdatacommons.nal.usda.gov2024-10-21 更新2025-01-15 收录
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https://agdatacommons.nal.usda.gov/articles/dataset/Angus_Sequence_Data_Animal_44993/24665976/1
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资源简介:
Whole genome sequence data for Bovidae Bos taurus - beef Angus. The data is in "fastq" format.The National Animal Germplasm Program has germplasm for this animal, with the repository number 44993.There are two versions of each file because we did paired end sequencing. There are two reads for each of the 210 data lines (a forward and a reverse read) summing to 420 total. A diagram of this is provided in the Collection Dataset. In the diagram, the two reads would correspond to read 1 and read 3.Resources in this dataset:Resource Title: Animal 44993 Sequence Data - SCINet.File Name: Web Page, url: https://app.globus.org/file-manager?origin_id=904c2108-90cf-11e8-9672-0a6d4e044368&origin_path=/LTS/ADCdatastorage/NAL/published/node32143/tar file containing 14 files. The files are:RAPiD-Genomics_F112_CSU_136201_P001_WC04_i5-515_i7-124_S28_L003_R1_001.fastq.gzRAPiD-Genomics_F112_CSU_136201_P001_WC04_i5-515_i7-124_S28_L003_R2_001.fastq.gzRAPiD-Genomics-F113-CSU-136201-P001-WC04-i5-515-i7-124_S164_L002_R1_001.fastq.gzRAPiD-Genomics-F113-CSU-136201-P001-WC04-i5-515-i7-124_S164_L002_R2_001.fastq.gzRAPiD-Genomics-F113-CSU-136201-P001-WC04-i5-515-i7-124_S28_L001_R1_001.fastq.gzRAPiD-Genomics-F113-CSU-136201-P001-WC04-i5-515-i7-124_S28_L001_R2_001.fastq.gzRAPiD-Genomics-F114-CSU-136201-P001-WC04-i5-515-i7-124_S28_L003_R1_001.fastq.gzRAPiD-Genomics-F114-CSU-136201-P001-WC04-i5-515-i7-124_S28_L003_R2_001.fastq.gzRAPiD-Genomics_F115_CSU_136201_P001_WC04_i5-515_i7-124_S28_L001_R1_001.fastq.gzRAPiD-Genomics_F115_CSU_136201_P001_WC04_i5-515_i7-124_S28_L001_R2_001.fastq.gzRAPiD-Genomics_F115_CSU_136201_P001_WC04_i5-515_i7-124_S28_L002_R1_001.fastq.gzRAPiD-Genomics_F115_CSU_136201_P001_WC04_i5-515_i7-124_S28_L002_R2_001.fastq.gzRAPiD-Genomics_F116_CSU_136201_P001_WC04_i5-515_i7-124_S383_L002_R1_001.fastq.gzRAPiD-Genomics_F116_CSU_136201_P001_WC04_i5-515_i7-124_S383_L002_R2_001.fastq.gzSCINet users: The .tar file can be accessed/retrieved with valid SCINet account at this location: /LTS/ADCdatastorage/NAL/published/node32143/44993.tarSee the SCINet File Transfer guide for more information on moving large files: https://scinet.usda.gov/guides/data/datatransferGlobus users: The files can also be accessed through Globus by following this data link. The user will need to log in to Globus in order to retrieve this data. User accounts are free of charge with several options for signing on. Instructions for creating an account are on the login page.
关于牛科动物 Bos taurus - Angus 牛的全基因组序列数据集。数据以 'fastq' 格式存储。国家动物种质项目保存了该动物的种质资源,库编号为 44993。每个文件包含两种版本,因为我们对每个样本进行了双端测序。每个数据行对应两个读取(一个正向读取和一个反向读取),总计 420 个读取。本数据集的收集数据集中提供了相应的示意图。在该图中,两个读取分别对应读取 1 和读取 3。数据集中的资源:
资源标题:动物 44993 序列数据 - SCINet。
文件名:网页,网址:https://app.globus.org/file-manager?origin_id=904c2108-90cf-11e8-9672-0a6d4e044368&origin_path=/LTS/ADCdatastorage/NAL/published/node32143/tar 文件包含 14 个文件。文件列表如下:
RAPiD-Genomics_F112_CSU_136201_P001_WC04_i5-515_i7-124_S28_L003_R1_001.fastq.gz
RAPiD-Genomics_F112_CSU_136201_P001_WC04_i5-515_i7-124_S28_L003_R2_001.fastq.gz
...
SCINet 用户:可以通过有效的 SCINet 账户访问/检索 .tar 文件,路径为 /LTS/ADCdatastorage/NAL/published/node32143/44993.tar。有关移动大文件的信息,请参阅 SCINet 文件传输指南:https://scinet.usda.gov/guides/data/datatransfer
Globus 用户:用户还可以通过 Globus 访问这些文件,请按照以下数据链接操作。用户需要登录 Globus 以检索此数据。用户账户免费,提供多种登录选项。创建账户的说明位于登录页面。
提供机构:
Ag Data Commons



