HMDB Clean
收藏NIAID Data Ecosystem2026-03-13 收录
下载链接：
https://zenodo.org/record/5758925
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资源简介：
This is a cleaned and condensed version of the HMDB XML metabolites file from https://hmdb.ca/downloads, current version 5.0. The original zipped file (~1GB) extracts to 6.49 GB xml file. The full is then cleaned and then only small sub-files are exported. This is too big to extract from the zipped file on the server, and gets clipped (to about 4GB). As a result, the XML to DF function fails because of missing data.
This repo containing 4 files is an alternative pointer for only the data needed. Code to process it from the hmdb_full file is pasted in the notes below.
These 4 files are used on www.datadrivenhypothesis.org
创建时间：
2021-12-05
