Additional file 3: of Tracing the history of LINE and SINE extinction in sigmodontine rodents

Table S1. Statistics and designation of L1 subfamilies and families. “Ory” stands for O. palustris and “Sig” stands for S. hispidus. “Peak” indicates the peak of the L1 divergence distribution of the subfamily or family identified by kernel smoothing. Copy numbers are normalized as copies per three Gbp of MiSeq sequence used for the search, which approximates the copy number per haploid genome. Designation of families is only shown after the first subfamily that belongs to it; all subsequent subfamilies belong to this family until the demarcation of the next family. Characters in family names: “S” represents S. hispidus-specific, “OS” for shared by O. palustris and S. hispidus and “OSP” for shared by O. palustris, S. hispidus and P. maniculatus. Numbers in the family names reflect their divergence among the family group with “1” being the youngest. Copy numbers of families are rounded sums of subfamily copy numbers per three Gbp of sequences and, thus, are occasionally off by one. (XLSX 14 kb)