Additional file 2 of Comparative gene expression profiling between optic nerve and spinal cord injury in Xenopus laevis reveals a core set of genes inherent in successful regeneration of vertebrate central nervous system axons

Additional file 2. DESeq2 differential expression data. Tabs are for each injury condition and time point vs. their relevant controls (N = 3 biological replicates, each). Tabs PW1–3) Tadpole spinal cord injury (SCI) hindbrain vs. age-matched, unoperated control hindbrain at 3 days, 1 week, and 3 weeks, respectively; PW4–6) Juvenile frog SCI hindbrain at 3 days, 1 week, and 3 weeks vs. unoperated control hindbrain; PW7–9) juvenile frog optic nerve crush (ONC) eye vs. the contralateral unoperated eye at 3 days, 11 days, and 3 weeks, respectively. Columns: A - Gene Name; B, baseMean - mean counts of all samples, normalized for sequencing depth. It does not take into account gene length and is used for estimating the dispersion of a gene; C, log2FoldChange - log2(control/experimental); in this analysis, negative values represent injury induced increases relative to control); D, lfcSE - Standard Error of the log2 fold change; E, stat - log2FoldChange/lfcSE; F, pvalue - the probability of the null hypothesis for an individual gene (i.e., variance among replicates = variance between conditions); G, padj - false discovery rate-adjusted (FDR) p-value.