Breinholt_et_al_degen12_DS3

Dataset 3 (acrossLEP_AHE+ALLtrans ). Nexus file consists of both AHE and the transcriptomic data of Kawahara and Breinholt 2015. The file contains codon position 1 & 2 for 2948 loci and 76 taxa. See taxa_list.txt for species names of each taxon, this is a nucleotide nexus file with a CHARSET that defines each gene that starts with codon position 1. Synonymous signal was removed using degen v1.4 Perl script (http://www.phylotools.com), and the third codon has been removed. Loci names correspond to Loci numbers in the Lep1 enrichment kit included in this DRAYD package. For further information see Breinholt et al. (2017) and Breinholt_et_al_Supplementary_File_1_S1-S11.xlsx in this Dryad package for more details.