NEXUS data file for phylogenetic analysis of Deltocephalinae (Hemiptera: Cicadellidae)

The Delt_Comb.NEX text file contains the original data used in the phylogenetic analyses of Zahniser & Dietrich, 2013 (European Journal of Taxonomy, 45: 1-211). The text file is marked up according to the standard NEXUS format commonly used by various phylogenetic analysis software packages. The file will be parsed automatically by a variety of programs that recognize NEXUS as a standard bioinformatics file format. The first nine lines of the file indicate the file type (Nexus), that 152 taxa were analyzed, that a total of 3971 characters were analyzed, the format of the data, and specification for two symbols used in the dataset. There are four datasets separated into blocks, one each for: 28S rDNA gene, Histone H3 gene, morphology, and insertion/deletion characters scored based on the alignment of the 28S rDNA dataset. Descriptions of the morphological characters and more details on the species and specimens included in the dataset are provided in the publication using this dataset. A text file, Delt_morph_char.txt, is available here that states the morphological characters and characters states that were scored in the Delt_Comb.NEX dataset. The original DNA sequence data are available from NCBI GenBank under the accession numbers indicated in publication. Chromatogram files for each sequencing read are available from the first author upon request.

Delt_Comb.NEX 文本文件包含了用于 Zahniser & Dietrich (2013) 所著《欧洲分类学杂志》第 45 卷第 1-211 页中系统发育分析的原始数据。该文本文件按照通用于多种系统发育分析软件包的 NEXUS 标准格式进行了标注。该文件将由多种识别 NEXUS 作为标准生物信息学文件格式的程序自动解析。文件的前九行表明了文件类型（Nexus），分析了 152 个分类单元，总共分析了 3971 个字符，并指出了数据的格式以及数据集中使用的两个符号的规格。该数据集分为四个部分，分别对应于 28S 核糖体 DNA 基因、组蛋白 H3 基因、形态学特征以及基于 28S 核糖体 DNA 数据集对插入/缺失特征进行评分。关于形态学特征以及数据集中所包含的物种和标本的更多详细信息，可在使用此数据集的出版物中找到。描述 Delt_Comb.NEX 数据集中评分的形态学特征和特征状态的文本文件 Delt_morph_char.txt 可在此处获取。原始 DNA 序列数据可通过 NCBI GenBank 下的指定存取号获取。每个测序读数的色谱图文件，在请求下，可由第一作者提供。