Additional file 3 of Comparison study of differential abundance testing methods using two large Parkinson disease gut microbiome datasets derived from 16S amplicon sequencing

Additional file 3: Table S2. List of chosen parameters for each function within each method that either differed from default, or did not have a set default (and therefore a choice had to be made). AIC: Akaike information criterion; FDR: False discovery rate; TMM: Trimmed mean of M-values; RLE: Relative log expression; LDA: Linear discriminant analysis.