Allele frequencies between Bos taurus and Bos indicus

Data related to Naval-Sanchez et al. 2019 "Selection Signatures in heat-resistant cattle reveal missense mutations in damage response gene HELB".\nSamples:\nWhole genome sequences from the 1000 Bull Genomes Project (Run6, Bos taurus, and Bos indicus) for breeds chosen as a reference for imputation were retrieved (Daetwyler et al. 2014; Hayes and Daetwyler 2018). This results in 440 whole-genome sequences across 18 cattle breeds. \nBreeds were grouped in accordance to their phenotypes and reported genomic crosses as taurine (humpless), indicine (with hump), admixed or African sanga, the two latter being stabilized composite breeds (Rege J 1999; Hanotte et al. 2002; Rege J et al. 2007; Mwai et al. 2015; Felius, Marleen et al. 2016).\nThe dataset contains 186 European Taurine, 102 Asiatic indicine and 80 cross-bred genomes as well as a set of African samples composed of 12 taurine, 41 sanga and 19 indicine.\n\nLineage: Mapping variant detection and imputation:\nGenetic variants from the sequenced animals were extracted and filtered to only keep bi-allelic variants with minimally four copies of the minor allele. Genomes of filtered variants were phased using Eagle (Loh et al. 2016) and imputed using FImpute 2.2 (Sargolzaei et al. 2014). The analysis resulted in the detection of 39,679,303 high-quality SNPs, being 24,080,747 considered common SNPs (MAF >=0.05). \n\n