Antimicrobial susceptibility phenotypes and genotypes in pig-derived Salmonella.

Heat map of antimicrobial resistance determinants and resistance phenotypes linked to 28 pig derived Salmonella isolates. Phenotype is displayed using colour, with green representing susceptibility and red representing resistance, according to guidelines set by EUCAST [47]. Light green represents those isolates for which antimicrobial susceptibility testing was not available (2/28 isolates). The antibiotic resistance genes that were identified by staramr v0.5.1 (https://github.com/phac-nml/staramr) are displayed in white text.