An R framework for region-centric integration of chromatin accessibility, DNA methylation, and gene expression in single cells

This record provides the data and scripts associated with the sciNOME manuscript. The archive contains case study datasets, upstream data processing code, and downstream analysis workflow scripts. The upstream scripts describe the processing steps used to generate the input files required by sciNOME. The downstream scripts perform the sciNOME analyses and generate the outputs reported in the manuscript.The materials in this record are intended to support reproduction of the case study analyses described in: sciNOME: an R framework for region-centric integration of chromatin accessibility, DNA methylation, and gene expression in single cells. The sciNOME R package is maintained in the associated GitHub repository. This Zenodo record contains the data and analysis scripts used with that package.