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Analysis code for "An integrative chemical and genomic similarity approach linking fungal secondary

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Figshare2026-01-14 更新2026-04-28 收录
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https://figshare.com/articles/dataset/_b_Analysis_code_for_An_integrative_chemical_and_genomic_similarity_approach_linking_fungal_secondary_b_/28380431
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Based on antiSMASH results, we ran in-house bash and python scripts to collect antiSMASH results (run_prosmash.sh, prosmash.py).To identifying the same antiSMASH predicted BGCs across the 16 genomes, we compared the BGC regions by gene content using antiSMASH7_BGC_clustering.R.For the manual BGC validations, we compiled a markdown detailing all results and decisions (Supplement_BGCs.Rmd)We clustered compounds using rdkit as documented in compound_clustering_A_fischeri.ipnb
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2026-01-14
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