Summary of results from Illumina GAII sequencing performed on cDNA pools.

Results are shown before and after adaptor, poly-A trimming and quality filtering. De novo transcriptome assembly was performed using the combined dataset (All). Results of the ‘mapping assemblies’ for the detection of SNPs are also shown. De novo contig assembly statistics are also shown in parentheses for more stringent settings (minimum contig size of 200 bp).
1 AI, EC and SUR represent sequence results for individual RNA pools made of samples from the Andaman Island landing centre, East Coast landing centres (Chennai, Vishakhapatnam and Tuticorin) and surviving animals from a WSSV outbreak on a farm in Bapatla respectively.