Fuzzy boundaries: Color and gene flow patterns among parapatric lineages of the Western shovel-nosed snake and taxonomic implication

Accurate delineation of lineage diversity is increasingly important, as species distributions are becoming more reduced and threatened. During the last century, the subspecies category was often used to denote phenotypic variation within a species range and to provide a framework for understanding lineage differentiation, often considered incipient speciation. While this category has largely fallen into disuse, previously recognized subspecies often serve as important units for conservation policy and management when other information is lacking. In this study, we evaluated phenotypic subspecies hypotheses within shovel-nosed snakes on the basis of genetic data and considered how evolutionary processes such as gene flow influenced possible incongruence between phenotypic and genetic patterns. We used both traditional phylogenetic and Bayesian clustering analyses to infer range-wide genetic structure and spatially explicit analyses to detect possible boundary locations of lineage contact..., , , # Data from: Fuzzy boundaries: Color and gene flow patterns among parapatric lineages of the Western shovel-nosed snake and taxonomic implication

[https://doi.org/10.5061/dryad.77rf2](https://doi.org/10.5061/dryad.77rf2)

## Description of the data and file structure

We used both traditional phylogenetic (nexus file) and Bayesian clustering analyses (genepop file) to infer range-wide genetic structure and spatially explicit analyses to detect possible boundary locations of lineage contact. 

### Files and variables

#### File: CHOC\_Microsatellite\_GENEPOP.txt

**Description:** 11 loci (Chionactis 11 loci: PEN160, TRI176, TET1713, TRI1164, PEN5400, TRI222, TRI1925, TRI199, TET193, TRI2219, TET1847)

##### Variables

* 4 population grouped by subspecies
* pop1 = Chionactis occipitalis talpina
* pop2 = Chionactis occipitalis occipitalis
* pop3 = Chionactis occipitalis annulata
* pop4 = Chionactis occipitalis klauberi

#### File: CHIONACTIS\_mtDNA\_ND1\_Matrix.nex

**Description:...