Characterization of the Ty3/gypsy complement of the AgamP3 heterochromatin.

Different heterochromatic regions were analyzed in detail: heterochromatin (H), pericentric heterochromatin (PH), diffuse intercalary heterochromatin (DIH), compact intercalary heterochromatin (CIH). Column 2 shows the total base pairs of Ty3/gypsy LTRrs and column 3 the % of each arm they represent. Columns 4 and 5 show the total number of insertions and the number of insertions per Mb of each region, respectively. Column 6 gives the number of insertions of each condition category (proviral and solo-LTR), and column 7 the percentage of proviral copies that are fragmented. Column 8, the average divergence (from the consensus of the corresponding family) of the Ty3/gypsy LTRrs contained in each chromosome region, and the standard deviation. Column 9, the number of insertions located within 10 Kb of each other. Column 10 gives gene density. Column 11 gives the total size of the chromosome region being analyzed.