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Turnaround time computed using NCBI BLAST+ and mpiBLAST on SMP server.

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https://figshare.com/articles/dataset/_Turnaround_time_computed_using_NCBI_BLAST_and_mpiBLAST_on_SMP_server_/1089190
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The readings show that on the same SMP server and a similar number of cores i.e. 48, mpiBLAST outperform NCBI BLAST+ by roughly 1.2 times. (Number of sequences in fasta file = 1000; Type: Nucleotide; No. of aligned Sequences = 1; Both NCBI BLAST+ and mpiBLAST executed on SMP server; Query sequences file: ss3_Table_7_Sequences.fasta (Text S4); Search Database: NR protein database (downloaded from NCBI)).
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2014-06-30
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