Interspecific hybridization and island colonization history, not rarity, most strongly affect the genetic diversity in a clade of Mascarene-endemic trees

What is provided is: 1. "dryad_reads.tar.gz" --> post-processed reads in which samples were demultiplexed and adapters trimed (using custom script found at https://github.com/z0on/2bRAD_denovo; trim2bRAD_2barcodes_noAdap.pl) and quality filtered (using fastxtools) such that they are ready for use in locus assembly pipelines.2. "VCF_files_min50.tar.gz" --> VCF files output from STACKS that were used for diversity metrics. note: loci were filtered in these datasets requiring loci to be present in 50% of samples. individuals with >50% missing data were also removed. each species have a list of samples removed associated with it. 3. "popmap-spp-328indivs-ch3GeneticDiversity.txt" --> the popmap file organizing individuals by species. notes on organization scheme: species names are abbreviated with the first 4 letters (i.e. D. nodosa ="nodo"). sample numbers (i.e. 022_18) can be associated with specific sample info (locality,voucher specimen etc.) in supplemental material table S1. voucher specimen information for these samples are stored in Tropicos database (www.tropicos.org)