Processed proteomics resources for Tau-P301L cynomolgus macaque cortex and spinal cord

This dataset contains processed proteomics data, figure source data, downstream analysis outputs, and R analysis scripts supporting a 4D label-free quantitative proteomic study of cortex and spinal cord tissues from Tau-P301L transgenic cynomolgus macaques and wild-type controls. The resource includes quality-control and missingness analyses, differential protein analysis results, GO functional annotation outputs, tissue-heterogeneity analyses, STRING protein-protein interaction module results, WGCNA module analysis outputs, and ortholog-aware cross-species comparison tables between the Tau-P301L macaque proteome and human Alzheimer's disease proteomic signatures. The primary mass spectrometry raw data and MaxQuant search/quantification outputs are deposited separately in PRIDE/ProteomeXchange under PXD079349. This Zenodo record provides processed matrices, source data, downstream analysis tables, README documentation, and scripts for reuse and manuscript figure verification.