Additional file 1 of LINE-1 ORF1p does not determine substrate preference for human/orangutan SVA and gibbon LAVA

Additional file 1: Human and orangutan SVAs referred to in the study. Human SVA_E1: Human SVA_E elements displaying a 6 bp insertion in the SINE-R. Genomic positions, target site duplications (TSD), polymorphic status and the VNTR subunit structure are shown. Arrays of VNTR subunits are boxed. Boxes highlighted in red indicate VNTR subunits providing splice acceptors for splicing to the mneoI cassette. Orangutan SVAs: Orangutan SVAs genotyped and amplified. Buschi, Babu, Dunja, Kiki and Elsi are P. abelii individuals for which short read archives are available. Numbers (011 etc) refer to individuals genotyped on genomic DNA. Positional information refers to the primary amplicon. Fields highlighted in yellow indicate the animals from which the respective element was amplified. TSD - Target site duplication; TD – transduction. Orangutan SVA VNTR: VNTR subunit structure of the orangutan SVAs tested for their retrotranspositional activity. Arrays of VNTR subunits are boxed.