Human Developing Kidney Spatial Transcriptomic Datasets (Xenium)
收藏资源简介：
These supplementary data contain additional Xenium files quantifying 246 genes from two human developing kidney samples. The raw microscopy data are not uploaded owing to their large size, but are available upon reasonable request (Nils Lindström: nils.lindstrom@med.usc.edu, Connor C. Fausto: cfausto@usc.edu). Week 13.5 Human Kidney (generated 2024_07_24) | -- Xenium_wk13p5-CF_2024_07_24-barcodes.tsv.gz contains a list of spatial barcodes| -- Xenium_wk13p5-CF_2024_07_24-features.tsv.gz contains a list of gene IDs| -- Xenium_wk13p5-CF_2024_07_24-cells.csv.gz contains a list of cells information| -- Xenium_wk13p5-CF_2024_07_24-matrix.mtx.gz contains the gene expression count data in Matrix Market Exchange Format| -- Xenium_wk13p5-CF_2024_07_24-transcripts.csv.gz contains a list of transcript information| -- Xenium_wk13p5-CF_2024_07_24-morphology.ome.tif contains image of tissue Week 16.5 Human Kidney (generated 2024_07_24) | -- Xenium_wk16p5-CF_2024_07_24-barcodes.tsv.gz contains a list of spatial barcodes| -- Xenium_wk16p5-CF_2024_07_24-features.tsv.gz contains a list of gene IDs| -- Xenium_wk16p5-CF_2024_07_24-cells.csv.gz contains a list of cells information| -- Xenium_wk16p5-CF_2024_07_24-matrix.mtx.gz contains the gene expression count data in Matrix Market Exchange Format| -- Xenium_wk16p5-CF_2024_07_24-transcripts.csv.gz contains a list of transcript information| -- Xenium_wk16p5-CF_2024_07_24-morphology.ome.tif contains image of tissue Additional files | -- md5sums.txt contains checksums for each file Modifications 2024-10-30 First draft created. This dataset is for a pre-print, and will be made publically available upon manuscript publication. 2026-06-15 Published with an embargo. Files will be made public and available for download upon journal publication. 2026-06-17 Re-uploaded to Zenodo under new submission because the DOI was linked to the pre-print and would be cited incorrectly. Re-uploaded with an embargo. Files will be made public and available for download upon journal publication.
