Additional file 2 of Breed of origin analysis in genome-wide association studies: enhancing SNP-based insights into production traits in a commercial Brangus population

Supplementary Material 2: Tables of variance component estimates, significant markers from GWAS and ANOVA results. Supplementary Tables 1 – Esimtates of variance compoents from additive SNP and BOA models with and without including PCQ and PC2 as fixed covariates. Supplementary Tables 2–3 - P-values for significant markers from the SNP GWAS on HCW and MARB. Supplementary Tables 4 – Dominance and additive effects of overlapping QTLs in the additive and dominance GWAS for both SNP and BOA GWAS in HCW and MARB. Supplementary Tables 5 – P-values for significant markers from the BOA GWAS on HCW. Supplementary Tables 6- ANOVA results from markers explaining over 1% of the genetic variance in the BOA GWAS for HCW. Supplementary Tables 7 – P-values for significant markers from the BOA GWAS on MARB. Supplementary Tables 8- ANOVA results from markers explaining over 1% of the genetic variance in the BOA GWAS for MARB