Additional file 8 of Replication origin location might contribute to genetic variability in Trypanosoma cruzi

Additional file 8: Table S1. Total number of raw paired-end reads for each sample and respective replicate, followed by the high quality paired-end reads after the pre-processing quality approach and the percentage of mapped paired-end reads in the CL Brenner EL and NEL genome haplotypes. Table S2. The average of %Genome coverage based on paired-end reads for each sample mapped to the genome haplotypes, based on the paired-end reads with highest mapping quality. Table S3. Filtered fold change analysis and MACS2 of MFA-seq in non-Esmeraldo-like haplotype Table S4. Filtered fold change analysis and MACS2 of MFA-seq in non-Esmeraldo-like haplotype (replicate 2) Table S5. Filtered fold change analysis and MACS2 of MFA-seq in Esmeraldo-like haplotype Table S6. Filtered fold change analysis and MACS2 of MFA-seq in Esmeraldo-like haplotype (replicate 2) Table S7. Comparison between MFA-seq peaks detected at replicates 1 and 2 Table S8. Position of MFA-seq peaks (Consensus) in non-Esmeraldo-like haplotype Table S9. Position of MFA-seq peaks (Consensus) in Esmeraldo-like haplotype Table S10. Genes where ORIs where found in chromosomes that do not harbor DGF-1 Table S11. Position of MFA-seq peaks (Consensus) in non Esmeraldo-like haplotype (replicate 2) Table S12. Position of MFA-seq peaks (Consensus) in Esmeraldo-like haplotype (replicate 2) Table S13. MFA-seq peaks (Consensus) that overlap between replicates Table S14. Percentage of DGF-1(bp) in the entire genome Table S15. Genomic location and IDs of subtelomeric genes described at Moraes-Barros 2012