Data and GWAS summary statistics for "Benchmarking non-additive genetic effects on polygenic prediction and machine learning-based approaches"

This repository contains data and summary statistics for analyses run in the preprint found here: https://doi.org/10.1101/2025.10.10.25337750 FilesRaw synthetic genotype files: eur_merged.bed.tar.gz eur_merged.bim.tar.gz eur_merged.fam.tar.gz Synthetic phenotypes and genotypes formatted for input for ML/DL and PGS models: sim_data_ml_ready_071125.tar.gz Summary statistics for additive and dominance GWASs run in the UK Biobank: ukb_int_sumstats_clean_071125.tar.gz