Data and code from: Cover crop and crop rotation effects on tissue and soil population dynamics of Macrophomina phaseolina and yield in no-till system

This dataset contains all code and data necessary to reproduce the analyses in the manuscript:
Mengistu, A., Read, Q. D. Cover crop and crop rotation effects on tissue and soil population dynamics of Macrophomina phaseolina and yield in no-till system. (Citation will be updated upon final acceptance of manuscript)
The .zip archive cropping-systems-0.0.zip contains data and code files.
Data

Quentin combined data with Yld 2011-2015.xlsx: MS Excel spreadsheet with all data averaged by experimental plot
Fred Allen combined data with Yld 2011-2015.xlsx: MS Excel spreadsheet with data at the individual plant level

Code

cropping_system_analysis_v2.1.Rmd: RMarkdown notebook with the majority of the data processing, analysis, and visualization code
marginal_means_byyear.Rmd: RMarkdown notebook with additional analyses producing estimated marginal means for individual years
equations.Rmd: RMarkdown notebook with formatted equations
formatted_figs.R: R script to produce figures formatted exactly as they appear in the manuscript

The Rproject file cropping-systems.Rproj is used to organize the RStudio project. Scripts and notebooks used in older versions of the analysis are found in the testing/ subdirectory.