Elution profiles, protein complexes, and supporting data accompanying "VerteBrain reveals novel neural and non-neural protein assemblies conserved across vertebrate evolution"

Description File Name Location Summary of experimental details breakdown from 35 experiments TableS1_VerteBrain_Experiment_breakdown.xlsx Paper, Table S1, Zenodo Elution profiles of 9,259 verNOG OGs (in peptide-spectral matches) TableS2_All_elutions_35exps_psm_verNOG.csv Paper, Table S2, Zenodo Pairwise PPI scores in VerteBrain above 8% FDR threshold TableS3_VerteBrain_scored_interactions_fdr8_annotated.tsv Paper, Table S3, Zenodo VerteBrain protein neighborhood clustering file (complexes) TableS4_VerterBrain_clustering_fdr8_annotated.tsv Paper, Table S4, Zenodo Evidence of support for VerteBrain PPIs across 9 other datasets TableS5_Evidence_of_support_PPI_102925.tsv Paper, Table S5, Zenodo Summary of immunoprecipitation mass spectrometry results TableS6_IPMSresults.xlsx Paper, Table S6, Zenodo VerNOGID reference set with human gene annotations VerNOG_annotated_human.xlsx Zenodo VerteBrain full classifier feature matrix featmat_35exps Zenodo VerteBrain top 70 classifier features VerteBrain_top70_features.xlsx Zenodo GOCC_AUROC_networks GOCC_AUROC_results.xlsx Zenodo Zebrafish vacuolated cell volume counts at 5dpf 5dpf_vcVolumes.xlsx Zenodo