List of genes and CRMs that showed comparable responses to the perturbations.

dnCad MOE, dominant negative cadherin mRNA over expression; HesC MASO, translation blocking MASO against hesc; Nodal MASO, translation blocking MASO against nodal; Nodal MOE, nodal mRNA over expression; SoxB1 MASO, translation blocking MASO against soxb1. Concentration or molarity of each reagent injected is shown under the name of each reagent.
aGenes and CRMs (within parenthesis) up regulated by the perturbation are shown in italic type and those down regulated in roman type.
bNumbers of genes and CRMs (within parenthesis) responded in the perturbation are shown.
cGenes and CRMs with known cis-regulatory information are underlined, and genes with asterisks (*) means that we failed capturing CRMs with known cis-regulatory information; blimp1b and eve[24], foxa[23], wnt8[26], delta[27], and nodal[14].