colicin_database
收藏DataCite Commons2022-09-01 更新2024-08-18 收录
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https://figshare.com/articles/dataset/colicin_database/20768260
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资源简介：
A database of over 10,000 colicins from over 50 species of bacteria were collated from the ENA as well as including some isolates from previously published sources. A multi-FASTA file containing the collated colicin sequences was utilised to generate a custom database via the prepareref command of ARIBA v2.14.6 where prepareref removes erroneous data and runs cd-hit to cluster the sequences based on a user-defined similarity threshold (90% in our case). ARIBA was then run with the FASTQ files of all isolates and the colicin database to report which sequences were observed in each isolate.
提供机构：
figshare
创建时间：
2022-09-01
