five

Data.zip

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NIAID Data Ecosystem2026-03-13 收录
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https://figshare.com/articles/dataset/Data_zip/17032442
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Food patch To assess rover or sitter-like larval behavior, a small amount of living yeast paste was added to standard agar plates (92 x 16 mm), creating two food patches (A and B) on the agar, each about 1.5 cm in diameter. The distance between the yeast patches was about 3 cm. About 10 mid third instar larvae, which had been previously removed from the food and carefully washed using small containers with a mesh on the bottom, were placed on food patch A at the beginning of each experiment. After 20 minutes, the number of larvae that were still in food patch A, the number of larvae in food patch B and the number of larvae not in any food patch (elsewhere) were counted to calculate the percentage of larvae that were still in food patch A and the percentage of larvae having left the first food patch (= larvae in food patch B or elsewhere). All experiments were carried out at 25°C and 60% relative humidity. The data was saved as xlsx-files. Distance tracking To record the locomotion of individual larvae, the setup of the Buridan apparatus was used to maintain an environment with constant temperature and lighting, using four circular fluorescent tubes to illuminate the larvae homogeneously. Black dyed agar plates were used to increase the contrast to the white larvae. Larvae, removed from the food and washed with water, were carefully placed in the centre of the agar plate. A camera, connected to a computer running the recording software, was positioned above the agar plate in order to record the position of each larva during the experiment. A one-minute video was recorded immediately after the larva was placed on the agar using OBS Studio (https://obsproject.com) as video recording software. Larvae that crawled under the agar before one minute had passed were discarded. The program Kinovea (https://www.kinovea.org) was used to analyze the video files recorded by OBS studio. Kinovea is a video player for sport analysis, but provides different features like the ability of tracking objects. After successfully tracking a larva, the program generates a text file containing the x and y coordinates (in cm) at each point in time (in ms). For further instructions on how to use the program see DOI: 10.17504/protocols.io.bz3ip8ke. A script based on R (version 4.0.5) was used to evaluate the Kinovea data in order to determine the individual travelled distances of each larva. The R-Script shortens the raw data to the desired duration (60 s) before the distance is calculated. The R-script also detects the time at which the larva starts moving (in ms) by determining the point in time after which the first distance is different from zero. The mean distance (in cm) and the mean latency to first movement (in ms) were calculated for all files within one group. For further information on how to use the script see DOI: 10.17504/protocols.io.bz3ip8ke
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2021-11-17
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