General prokaryote and eukaryote Kraken2 database

Database description Kraken2 database containing all NCBI RefSeq “Complete genome” entries (database accessed on the 11th of February 2021) with accession prefixes NC, NW, AC, NG, NT, NS, and NZ of the following taxonomic groups: archaea, bacteria, fungi, human, protozoa, and viruses. This database also contained a selection of metazoan model species reference genomes, listed below. Species Accession Aedes aegypti GCF_002204515 Aedes albopictus GCF_006496715 Anas platyrhynchos GCF_015476345 Stomoxys calcitrans GCF_001015335 Apis mellifera GCF_003254395 Bos taurus GCF_002263795 Capra hircus GCF_001704415 Cavia porcellus GCF_000151735 Chlorocebus sabaeus GCF_015252025 Columba livia GCF_000337935 Culex quinquefasciatus GCF_015732765 Equus caballus GCF_002863925 Gallus gallus GCF_000002315 Homo sapiens GCF_000001405 Ixodes scapularis GCF_002892825 Meleagris gallopavo GCF_000146605 Mesocricetus auratus GCF_000349665 Mus musculus GCF_000001635 Numida meleagris GCF_002078875 Ovis aries GCF_002742125 Rattus norvegicus GCF_015227675 Sus scrofa GCF_000003025 Database reconstruction To reconstruct the database, extract the taxonomy.tar.gz archive as follows: tar -xvzf taxonomy.tar.gz the hash.k2d file has been compressed, to decompress it, use the following command: gunzip --remove hash.k2d.gz taxonomy.tab contains the required taxonomy information to visualize Kraken2 results with Krona.