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AIMNet-NSE test datasets

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https://zenodo.org/record/5007979
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资源简介:
Ions-16 and ChEMBL-20 datasets used to test the performance of the AIMNet-NSE model. The datasets contain PBE0/ma-Def2-SVP energies and NBO atomic charges for the non-equilibrium conformers of neutral organic molecules randomly sampled from the PubChem database (Ions-16) and B97-3c optimized conformations of neutral organic molecules randomly sampled from the ChEMBL database (ChEMBL-20). The number in the dataset name corresponds to the maximum number of non-hydrogen atoms in the molecules. The dataset which was used for training the AIMNet-NSE model contains molecules up to 12 non-H atoms, whereas Ions-16 and ChEMBL-20 contain the molecules with 13 non-hydrogen atoms or more. The datasets are formatted as HDF5 files. Data group names have the format as _???, where ??? corresponds to the number of atoms in molecules. Each group contains data for M molecules, each with N atoms. The groups contain the following datasets: Name    Data type    Shape      Description mol_id     S24             M            Molecule ID coord      float32        M, N, 3    Cartesian coordinates, Å numbers uint8           M, N         Atomic numbers charge    int8             M              Molecular charge mult        unit8           M              Spin multiplicity energy    float64        M              PBE0/ma-def2-SVP energy, eV charges   float32       M, N, 2       α and β NBO charges
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2021-06-23
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