Figure 3 Data

Data from Figure 3: Pangenome of E. coli genomes used in this study. (A)Gene presence/absence matrix representation of the pangenome. A total of 40,442 clusters of gene groups were identified through Roary using 95% BLAST identity. Genes that are present in each isolate are represented by a blue marker. Genes that were found to be present in all strains are situated in the core and the rest of the pangenome is classed as the accessory genome. The tree next to the matrix represents the phylogeny of the input genomes. (B) Relationship between pangenome size and and number of genomes considered. The total number of genes continues to grow logarithmically, while the number of conserved genes declines at a slow rate, highlighting that this is an open pangenome.