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Neighbourhood Adjusted Wallace Coefficient: supporting data

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DataCite Commons2020-08-29 更新2024-07-27 收录
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Supporting information for the manuscript entitled <b><i>"Rapid Identification of Stable Clusters in Bacterial Populations Using the Adjusted Wallace Coefficient"</i></b> <b>doi:</b> https://doi.org/10.1101/299347<br>Files included in the zip archive:<br><b>README.txt:</b> Description of the various files in the archive<b>campylobacter_accessions.txt:</b> List of C jejuni genome accessions<b>salmonella_accessions.txt:</b> List of S enterica genome accessions<b>campylobacter (folder):</b><br><b>campylobacter_calls.csv:</b> allele call results<b>campylobacter_clusters.txt:</b> goeBURST cgmlst profile clusters<b>campylobacter_donor_recipient.txt:</b> donor-recipient merger table<b>campylobacter_stats_table.txt:</b> partitions statistics over goeburst thresholds<b>campylobacter_st_definitions.tsv:</b> Sequence Type definitions<b>campylobacter_strain_st.tsv:</b> Strain vs. Sequence Type lookups<b>Alleles (folder):</b> contains 697 multifasta files with allelic data for loci in C jejuni cgMLST scheme<br><b>salmonella (folder):</b><br><b>salmonella_calls.csv:</b> allele call results<b>salmonella_clusters.txt:</b> goeBURST cgmlst profile clusters<b>salmonella_donor_recipient.txt:</b> donor-recipient merger table<b>salmonella_stats_table.txt:</b> partitions statistics over goeburst thresholds<b>salmonella_st_definitions.tsv:</b> Sequence Type definitionssalmonella_strain_st.tsv: Strain vs. Sequence Type lookups
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2018-04-18
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