Inference of single-cell phylogenies from lineage tracing data with Cassiopeia
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Synthetic benchmarking data used in our study entitled "Inference of single-cell phylogenies from lineage tracing data with Cassiopeia" published in <em>Genome Biology</em>. Phylogenies were simulated with varying characters, states, experimental durations, mutation rates, dropout rates, and state distributions as described in our manuscript. This dataset includes simulated phylogenies of size 400 and 1000 cells. Each phylogeny is saved as a python Networkx object, pickled for convenience. These objects can be read in using Python version >= 3 with the "pickle" library. For stress testing and simulating additional phylogenies, please refer to our Github: https://github.com/YosefLab/Cassiopeia
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Zenodo创建时间：
2020-03-11
