Phylogenetic datasets for Phaeodactylum MCFc (Giustini et al. 2025)
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https://figshare.com/articles/dataset/Phylogenetic_datasets_for_Phaeodactylum_MCFc_Giustini_et_al_2025_/28207955
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Phylogenetic datasets for Phaeodactylum MCFc (Giustini et al. 2025)DescriptionArchive containing alignments in FASTA format (before and after ali2phylip.pl) and trees built with IQ-TREE 2 in Newick format for the different stages of the analysis:
OG0001460-FigA:orthogroup before enrichmentremoved sequences: Monosiga and PorphyraOG0001460-8-raw:orthogroup after enrichmentOG0001460-8-FigB:orthogroup after enrichmentremoved sequences: Bolidomonas ans PavlovaOG0001460-8-FigC:orthogroup after enrichmentremoved sequences: Ochropytes-specific gene copy (and Bolidomonas)Files in archive:.
├── OG0001460-8-FigB-a2p.fasta
├── OG0001460-8-FigB.fasta
├── OG0001460-8-FigB.tre
├── OG0001460-8-FigC-a2p.fasta
├── OG0001460-8-FigC.fasta
├── OG0001460-8-FigC.tre
├── OG0001460-8-raw-a2p.fasta
├── OG0001460-8-raw.fasta
├── OG0001460-8-raw.tre
├── OG0001460-FigA-a2p.fasta
├── OG0001460-FigA.fasta
├── OG0001460-FigA.tre
└── README.mdCommandsAlignment filteringali2phylip.pl --p80 --min=0.5 --max=0.5 –map-ids OG0001460-8-raw.fastaTree inferenceiqtree2 -bb 1000 -m C20 -s OG0001460-8-raw.p80Tree formattingformat-tree.pl --map-ids --itol --ladderize=asc --annotate='no rank' \
--collapse=color --colorize=klepto-cb.cls --taxdir=taxdump-20230504/ \
--in=.p80 --out=-C20 --root-on-family=outg OG0001460-8-raw.p80.treefile
创建时间：
2025-10-04
