Dataset for Aqueous habitats and carbon inputs shape the microscale geography and interaction ranges of soil bacteria

This repository hosts data for the paper entitled: "Aqueous habitats and carbon inputs shape the microscale geography and interaction ranges of soil bacteria" by Samuel Bickel and Dani Or.

The following files are provided:

Microcosm experiment:

- Fluorescence microscopy images of the microcosm experiment (*.tif)

- Code used for extracting cell locations from images (image_analysis.py)

Global model estimates from the bacterial interactions heuristic model:

- Maps of estimated cell density and proportion of biomass associated with anoxic cell clusters (*.nc)