HG002 Supernova and Canu - Hybrid Assembly

Example data for creating a hybrid assembly from a supernova (10X Genomics linked reads) and canu (PacBio CLR long reads). Reads used to generate these assemblies were sourced from the Genome In A Bottle dataset for HG002. Pipeline details can be found here.

Assembly files with haplotigs have been removed using purge_dups:

HG002_canu.contigs.purged.fa.gz

HG002_canu.unitigs.clean.bed (unitigs from canu)

HG002_supernova.pseudohap.purged.fa.gz

1 kb BLASTn alignments of supernova against canu:

HG002.blastn.summary.txt

Hybrid assembly:

HG002_hybrid.assembly.fa.gz (main scaffolds)

HG002_hybrid.assembly.leftover.fa.gz (unplaced scaffolds)

HG002_hybrid.source.bed (source assembly)

HG002_hybrid.source_leftover.bed (source assembly)

HG002_hybrid.scaff.t2t.txt (best chromosome match against T2T)