Additional file 1 of Insights into genomic evolution from the chromosomal and mitochondrial genomes of Ustilaginoidea virens

Additional file 1: Table S1. Chromosome lengths in genome assemblies of U. virens strains UV8b and UVP1. Table S2. List of candidate effector proteins in U. virens. Table S3. The average distance of effector genes apart from adjacent transposable elements in U. virens genome. Table S4. Conservation analysis of candidate effector proteins in U. virens compared with the closely related fungal species M. anisopliae and F. graminearum. Table S5. Location of the U. virens strains collected in this study. Table S6. SNP frequencies in coding sequences of candidate effector- and secreted protein-encoding genes in different U. virens strains compared with the reference genome. Table S7. The predicted structural variations between U. virens UV8b and UVP1 genomes. Table S8. Lineage specific regions in UV8b genome identified through comparisons with other U. virens strains. Table S9. The sizes of fungal mitochondrial genomes collected from MiToFun database. Table S10. The putative open reading frames in intronic regions of the mitochondrial genes in UV8b. Table S11. The sizes of mitochondrial genomes in different U. virens strains. Table S12. The quality of genome assemblies using non-hybrid and hybrid assembling methods.