five

Stramenopile multigene tree dataset

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DataCite Commons2024-12-17 更新2024-08-25 收录
下载链接:
https://www.repository.cam.ac.uk/handle/1810/261420
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资源简介:
Supporting data regarding the construction of a 63-gene concatenated tree of all photosynthetic stramenopiles. This dataset includes: - detailed BLAST outputs for the complete protein-coding component of Phaeodactylum tricornutum, searched against complete libraries from each species incorporated into the alignment - fasta format clusters and single-gene neighbour-joining trees for 65 proteins with broad (>90%) ochrophyte conservation - a concatenated 26693 aa alignment of 63 proteins for which ochrophyte sequences were verified to be monophyletic, and eight modified alignments from which fast-evolving site categories were serially deducted. A "readme" file in the main directory provides additional details as deemed appropriate.
提供机构:
Apollo - University of Cambridge Repository
创建时间:
2016-12-04
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