Species-Traits matrices

This file contains several dataset of functionally assigned Metagenome-Assembled Genomes (MAGs), that serves as a basis for a large-scale analysis of the functional diversity of bacterial communities from freshwater and bacterial genomes (GTDB) from various environments. the file contains:
df_GTDB.txt: Species-trait matrice of 28 714 genomes x 8 376 traits (from the Genome Taxonomy DataBase)List_fun_cat: file (RDS) containing a list of 32 functional categories. In each list are the Kegg Orthologs index (KO) of genes tied to each functional category.MAGs_ab_input_alpha.csv: Species-abundance matrice to calculate alpha functional dissimilarity of experimental microcosms (Freshwater bacterial communities)MAGs_KO_input_alpha.csv: Species-trait matrice to calculate alpha functional dissimilarity of experimental microcosms (Freshwater bacterial communities)pMAGs_ab_input_beta.csv: Species-abundance matrice to calculate beta functional dissimilarity of experimental microcosms (Freshwater bacterial communities)pMAGs_KO_input_beta.csv: Species-trait matrice to calculate beta functional dissimilarity of experimental microcosms (Freshwater bacterial communities)MAGs_KO_input_gamma.csv: Species-trait matrice of the whole pool of MAGs recovered from the experimental microcosms to calculate gamma functional dissimilarity