Manual nuclei segmentations in near-isotropic, reconstructed volume electron microscopy (FIB-SEM) of A431 epithelial cells (aic_desmosome-3)
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https://janelia.figshare.com/articles/dataset/Manual_nuclei_segmentations_in_near-isotropic_reconstructed_volume_electron_microscopy_FIB-SEM_of_A431_epithelial_cells_aic_desmosome-3_/26511841
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<b>Annotation description</b>: Dense segmentations of nuclei in aic_desmosome-3 using Amira-Avizo (Thermo Fisher Scientific) and "Using Amira to manually segment organelles in vEM for machine learning V.3" protocol.<b>Annotation protocol</b>: Using Amira to manually segment organelles in vEM for machine learning V.3 (http://dx.doi.org/10.17504/protocols.io.bp2l61rb5vqe/v3)<b>Software</b>: Amira 3D 2021.1, Classic Segmentation Workroom<b>Classes annotated</b>: Nuclei<b>Source (EM) dataset ID</b>: aic_desmosome-3<b>Source (EM) voxel size (nm)</b>: 4 x 4 x 4 (X, Y, Z)<b>Source (EM) data dimensions (µm)</b>: 14.9 x 12.9 x 48.4 (X, Y, Z)<b>Source (EM) DOI</b>: https://doi.org/10.25378/janelia.22675078<b>Dataset URL</b>: s3://janelia-cosem-datasets/aic_desmosome-3/aic_desmosome-3.zarr/recon-1/labels/inference/segmentations/nuc/<b>Visualization website</b>: https://openorganelle.janelia.org/datasets/aic_desmosome-3
提供机构:
Janelia Research Campus
创建时间:
2024-08-07



