Genome datasets for Calonectria henricotiae and C. pseudonaviculata causing boxwood blight disease and related fungal species

Boxwood blight disease, caused by the fungi Calonectria henricotiae and C. pseudonaviculata, is an emergent threat to natural and managed landscapes worldwide.
Boxwood blight emerged for the first time in the U.K. during the 1990s, then spread rapidly throughout Europe. By 2011, the fungus that causes the disease, Calonectria pseudonaviculata, was found in the U.S., threatening an industry valued at $103 million annually and countless mature landscapes, some dating back to early Colonial times. Since the first U.S. outbreaks, boxwood blight has been identified from a total of 19 states that together comprise 62% of the total U.S. boxwood production. A second pathogen, C. henricotiae, was recently described from five European countries. Infection can be latent, and the pathogen may sequester in less susceptible boxwood cultivars. Because there are no curative treatments—fungicides are at best suppressive of symptoms—infected plants are rendered unfit for sale. If infected plants are not destroyed, they provide a long-lived source of inoculum that spreads the pathogen by spores or resistant survival structures in soil, air, or water. Our goal is to provide knowledge and tools needed to reduce the impact of boxwood blight on the green industry.
This database includes genome datasets from Calonectria pathogens of boxwood and related species. Resources in this dataset:Resource Title: Genome assembly, Calonectria pseudonaviculata CBS 139707 (aka cpsCT01). File Name: CT1_ALLPATHS.scaffolds_FINAL.txtResource Description: This assembly is also accessioned on NCBI GenBank under accession number PGGA00000000. The genome is contained in 27 contigs derived from Illumina and PacBio reads, depth of coverage 285x.Resource Title: Draft genome assembly, Calonectria henricotiae NL009. File Name: NL009contigs_FINAL111517.txtResource Description: This is a partial genome assembly for Calonectria henricotiae isolate NL009. The assembly is also accessioned on NCBI GenBank as PGSF00000000. Sequences were generated using Illumina MiSeq, total depth of coverage is 34x.Resource Title: Draft genome assembly, Calonectria henricotiae isolate CB077. File Name: CB77contigs_subset_FINAL111517.txtResource Description: This is a partial genome assembly of Calonectria henricotiae CB077, also accessioned on NCBI GenBank as PGSE00000000. The sequences were generated using an Illumina MiSeq, depth of coverage 30x.Resource Title: Genome assembly, Calonectia leucothoes CBS 109166. File Name: Cleucothes _contigs_032017REV1.txtResource Description: Draft genome assembly from Calonectria leucothoes CBS 109166, also accessioned on NCBI GenBank as NAJI00000000. The sequences were generated using an Illumina MiSeq, average depth of coverage 124x.Resource Title: Genome assembly, Calonectria naviculata CBS 101121. File Name: Cnaviculata_CBS101121 contig list_031017_FINAL2 (1).txtResource Description: Draft genome assembly of Calonectria naviculata CBS 101121, also accessioned on NCBI GenBank as NAGG00000000. The genomes was generated using an Illumina MiSeq, average depth of coverage 84x.Resource Title: Calonectria pseudonaviculata CBS 139707, Gene model predictions (CDs). File Name: CpseudonaviculataPredicted_CT1_CDS.txtResource Description: CDs file of gene models predicted using Coding Quarry 2Resource Title: Calonectria pseudonaviculata CBS 139707, GFF file for gene model predictions. File Name: CpseudonaviculataCT1PredictedPass.gff3.txtResource Description: Gene model predictions and GFF file generated using CodingQuarry2.Resource Title: Draft genome assembly, Calonectria henricotiae CBS 138102 (aka CB045). File Name: CB45Jelly1b_FINAL111717_FINAL.txtResource Description: This datatset contains a draft genome assembly for Calonectria henricotiae CBS 138102; these data are also accessioned on NCBI GenBank as JYJY00000000.Resource Title: Genome assembly, Calonectria pseudonaviculata CBS 139394. File Name: CBS 139394.txtResource Description: This file contains the draft genome assembly for Calonectria pseudonaviculata CBS 139394. The assembly is accessioned with NCBI GenBank, JYJY00000000Resource Title: Draft genome assembly, Calonectria pseudonaviculata CBS 114417. File Name: cbs114417contigs_FINAL_final112017.txtResource Title: Draft genome assembly, Calonectria pseudonaviculata cpsCT13. File Name: cpsCT13_Final_FINAL111717.txtResource Title: Draft genome assembly Calonectria pseudonaviculata ICMP 14368. File Name: ICMP14368FINAL112017_final.txtResource Title: Draft genome assembly, Calonectria pseudonaviculata NC-BB1. File Name: NCBB1contigs_FINAL_final112017.txtResource Title: Draft genome assembly, Calonectria pseudonaviculata ODA1. File Name: ODA1contigs_FINAL112117final.txtResource Title: Draft genome assembly, Calonectria henricotiae NL017. File Name: NL017contigs_FINAL111717.txt

Boxwood blight disease，由真菌Calonectria henricotiae和C. pseudonaviculata引起，是对全球自然景观和人工景观的一种新兴威胁。Boxwood blight首次在英国20世纪90年代出现，随后迅速传播至欧洲。至2011年，导致该疾病的真菌Calonectria pseudonaviculata在美国被发现，威胁到一个每年价值1.03亿美元的产业以及无数成熟景观，其中一些可追溯至早期殖民时期。自美国首次爆发以来，boxwood blight已在19个州被发现，这些州共同构成了美国62%的boxwood产量。另一种病原体C. henricotiae最近在五个欧洲国家被描述。感染可能呈潜伏状态，病原体可能在抗性较弱的boxwood品种中寄生。由于缺乏根治治疗方法——杀菌剂最多只能抑制症状——受感染的植物变得不适合销售。如果未销毁受感染植物，它们将提供长期存活的接种源，通过孢子或土壤、空气或水中的抗性生存结构传播病原体。我们的目标是提供减少boxwood blight对绿色产业影响所需的知识和工具。该数据库包含来自Calonectria病原体的boxwood和相关物种的基因组数据集。数据集资源包括：

* 资源标题：基因组组装，Calonectria pseudonaviculata CBS 139707（又名cpsCT01）。文件名：CT1_ALLPATHS.scaffolds_FINAL.txt。资源描述：该组装亦在NCBI GenBank注册，注册号为PGGA00000000。基因组由27个连续片段组成，这些连续片段来自Illumina和PacBio读取，覆盖深度为285倍。

* 资源标题：Calonectria henricotiae NL009的草图基因组组装。文件名：NL009contigs_FINAL111517.txt。资源描述：这是Calonectria henricotiae NL009的草图基因组组装。该组装亦在NCBI GenBank注册，注册号为PGSF00000000。序列是通过Illumina MiSeq生成的，总覆盖深度为34倍。

* 资源标题：Calonectria henricotiae isolate CB077的草图基因组组装。文件名：CB77contigs_subset_FINAL111517.txt。资源描述：这是Calonectria henricotiae CB077的草图基因组组装，亦在NCBI GenBank注册，注册号为PGSE00000000。序列是通过Illumina MiSeq生成的，覆盖深度为30倍。

* 资源标题：基因组组装，Calonectria leucothoes CBS 109166。文件名：Cleucothes _contigs_032017REV1.txt。资源描述：这是Calonectria leucothoes CBS 109166的草图基因组组装，亦在NCBI GenBank注册，注册号为NAJI00000000。序列是通过Illumina MiSeq生成的，平均覆盖深度为124倍。

* 资源标题：基因组组装，Calonectria naviculata CBS 101121。文件名：Cnaviculata_CBS101121 contig list_031017_FINAL2 (1).txt。资源描述：这是Calonectria naviculata CBS 101121的草图基因组组装，亦在NCBI GenBank注册，注册号为NAGG00000000。基因组是通过Illumina MiSeq生成的，平均覆盖深度为84倍。

* 资源标题：Calonectria pseudonaviculata CBS 139707的基因模型预测（CDs）。文件名：CpseudonaviculataPredicted_CT1_CDS.txt。资源描述：使用Coding Quarry 2预测的基因模型的CDs文件。

* 资源标题：Calonectria pseudonaviculata CBS 139707的基因模型预测的GFF文件。文件名：CpseudonaviculataCT1PredictedPass.gff3.txt。资源描述：使用CodingQuarry2生成的基因模型预测和GFF文件。

* 资源标题：Calonectria henricotiae CBS 138102（又名CB045）的草图基因组组装。文件名：CB45Jelly1b_FINAL111717_FINAL.txt。资源描述：该数据集包含Calonectria henricotiae CBS 138102的草图基因组组装；这些数据亦在NCBI GenBank注册，注册号为JYJY00000000。

* 资源标题：基因组组装，Calonectria pseudonaviculata CBS 139394。文件名：CBS 139394.txt。资源描述：该文件包含Calonectria pseudonaviculata CBS 139394的草图基因组组装。该组装在NCBI GenBank注册，注册号为JYJY00000000。

* 资源标题：Calonectria pseudonaviculata CBS 114417的草图基因组组装。文件名：cbs114417contigs_FINAL_final112017.txt。

* 资源标题：Calonectria pseudonaviculata cpsCT13的草图基因组组装。文件名：cpsCT13_Final_FINAL111717.txt。

* 资源标题：Calonectria pseudonaviculata ICMP 14368的草图基因组组装。文件名：ICMP14368FINAL112017_final.txt。

* 资源标题：Calonectria pseudonaviculata NC-BB1的草图基因组组装。文件名：NCBB1contigs_FINAL_final112017.txt。

* 资源标题：Calonectria pseudonaviculata ODA1的草图基因组组装。文件名：ODA1contigs_FINAL112117final.txt。

* 资源标题：Calonectria henricotiae NL017的草图基因组组装。文件名：NL017contigs_FINAL111717.txt。