MethylomeMiner: A Novel Tool for High-Resolution Analysis of Bacterial Methylation Patterns from Nanopore Sequencing

This dataset accompanies the manuscript MethylomeMiner: A Novel Tool for High-Resolution Analysis of Bacterial Methylation Patterns from Nanopore Sequencing. It contains sequencing data, genome assemblies, annotations, and downstream analysis results used in the study. Basecalled FASTQ files are deposited at NCBI SRA under BioProject PRJNA675431.The following files are provided here on Zenodo: de novo assembled genomes (FASTA) genome annotations (GFF, GBK) BAM files with methylation detection (4mC, 5mC and 6mA) bedMethyl tables Roary pangenome results (gene presence/absence table and pre-annotated GFF) MethylomeMiner outputs (per genome and pangenome-level outputs) For a detailed description of the dataset structure, please refer to the included README.md file.