遇见数据集

Electronic structure calculations for model furylfulgides

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Zenodo2024-06-28 更新2026-05-29 收录
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This dataset is intended as an attachment to the Response to the Reviewers for manuscript NJ-ART-10-2023-004752, submitted to the New Journal of Chemistry. Contents: 1. Vertical_excitation_spectra - This section of the dataset is related to the response to question 5 from Reviewer 1. It contains input and output files from the calculations of the excitation spectra of the Eα and the C isomers of the truncated furylfulgide (compound 2). 2. DFTB_SSR_based_NAMD_simulations - This section of the dataset is related to the response to question 9 from Reviewer 1. It contains the results of nonadiabatic molecular dynamics (NAMD) simulations of the photorelaxation process of furylfulgide tBu-1, carried out at the DFTB/SSR level of theory. The individual trajectories are located in the subdirectories run_0001, run_0002, etc. • wrapper.cpp is the source code for the interface to DFTB+. At each time step of the simulation, the interface calls DFTB+ for the calculation of state energies, gradients, and the S1-S0 nonadiabatic coupling vector. It then parses the output files from DFTB+, and propagates the time evolution of the system. • The files initial_coordinates.xyz and initial_velocities specify the initial positions (in units of Angstrom) and velocities (in atomic units) of the nuclei. • The file control specifies the number of NAMD steps, the classical time step (in atomic units), the time step for the integration of the electronic time-dependent Schrödinger equation, the number of states, the initially occupied state, and the initial wavefunction coefficients • trajectory.xyz is the nuclear trajectory • energy.csv contains the energy of state S0, the energy of state S1, the energy of the occupied state, and the total energy during the simulation • coefficients.csv contains the wavefunction coefficients and the state populations during the trajectory

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创建时间:
2024-06-28
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