Repeat annotation of <i>Linum tenue</i>
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The file contains the annotation for the repetitive regions in <i>Linum tenue</i>.The detection of repeats has been done with RepeatMasker/RepeatModeler (https://www.repeatmasker.org/) using a custom repeat library.The genome has been deposited to ENA with the accession id: GCA_946122785 (Project PRJEB52918). See link below.It is part of this article Gutiérrez-Valencia, J., Fracassetti, M., Berdan, E. L., Bunikis, I., Soler, L., Dainat, J., ... & Slotte, T. (2022). Genomic analyses of the Linum distyly supergene reveal convergent evolution at the molecular level. <i>Current Biology</i>, <i>32</i>(20), 4360-4371. 10.1016/j.cub.2022.08.042The file is in BED format converted with [BEDOPS](https://bedops.readthedocs.io/en/latest/content/reference/file-management/conversion/rmsk2bed.html). The fourth (Repeat class) and eleventh (Repeat name) columns have been reversed to highlight the Repeat name in the visualization. <br>Query sequence 1 chromosomeQuery start 2 startQuery end 3 stopRepeat class 4 idSmith-Waterman score 5 scoreStrand 6 strandPercentage, substitutions 7 Percentage, deleted bases 8 Percentage, inserted bases 9 Bases in query, past match 10 Repeat name 11 Bases in complement of the repeat consensus sequence 12 Match start 13 Match end 14 Unique ID 15 Higher-scoring match (optional) 16



