Genetic data for Aurelia systematics

Sequence sets, alignments and tree files associated with <b>Lawley, J.W., Gamero-Mora, E., Maronna, M.M., Chiaverano, L.M., Stampar, S.N., Hopcroft, R.R., Collins, A.G., Morandini, A.C. 2021. The importance of molecular characters when morphological variability hinders diagnosability: systematics of the moon jellyfish genus <i>Aurelia </i>(Cnidaria: Scyphozoa). PeerJ https://doi.org/10.7717/peerj.11954</b>.<br><b>See below a description of the attached files</b>. When applicable, just replace the word (Marker) for 16S, COI, ITS1 or 28S (for COI files, disregard the "-ip_ia1" that appears in parentheses in filenames). For relevant codes used for molecular analyses based on these files see github.com/lawleyjw/Aurelia.<br>- (Marker)-Aurelia-seqs.fasta - Sequence set used to generate (Marker)-Aurelia(-ip_ia1).fasta. Sequence IDs normally appear as "&gt;(isolate/acession)-(previous species ID)-(sampling locality)".<br>- (Marker)-Aurelia-seqs-UPDATED.fasta - Same sequence set as above, but sequence IDs appear with updated species names as "&gt;(accession)-(updated species ID)|(previous sequence ID, as in (Marker)-Aurelia-seqs.fasta above)".<br>- (Marker)-Aurelia(-ip_ia1).fasta - Alignment used to generate (Marker)-Aurelia.tre. Sequence IDs normally appear as "&gt;(isolate/acession)-(previous species ID)-(sampling locality)".<br>- (Marker)-Aurelia(-ip_ia1)-UPDATED.fasta - Same alignment as above, but sequence IDs appear with updated species names as "&gt;(accession)-(updated species ID)|(previous sequence ID, as in (Marker)-Aurelia(-ip_ia1).fasta above)".<br>- (Marker)-Aurelia.tre - Parsimony tree file in Newick format with branch lengths, derived from (Marker)-Aurelia(-ip_ia1).fasta; for Goodman-Bremer support values and bootstrap resampling frequencies see Fig. S4-S7 in Lawley et al. (2021).<br>- concat-Aurelia.nex - Concatenated sequence matrix in Nexus file (from Sequence Matrix), including sequences of all markers (based on single-marker alignments) for some representative specimens of each species. This file was used to generate concat-Aurelia.tre and concatML-Aurelia.tre. For details on species composition and species ID see Table S5 in Lawley et al. (2021).<br>- concat-Aurelia.tre - Concatenated parsimony tree file in Newick format with branch lengths, derived from concat-Aurelia.nex. For Goodman-Bremer support values and bootstrap resampling frequencies see Fig. 9 in Lawley et al. (2021).<br>- concatML-Aurelia.tre - Concatenated maximum likelihood tree file in Nexus format (from FigTree), derived from concat-Aurelia.nex, including SH-aLRT and ultrafast bootstrap values, respectively (see Fig. S3 in Lawley et al., 2021).