Dataset for "High intraspecies allelic diversity in Arabidopsis NLR immune receptors is associated with distinct genomic and epigenomic features "

Data generated associated with understanding the features of NLRs in Arabidopsis Col-0. Contains: -all_gene_table.xslx: %CG gene body methylation, log2(TPM), distance to nearest TE, Pi (normalized by bp and by effective site), Tajima's D for all genes -working_table.xslx: cluster status, N-terminal domain class, and genome position of NLRs -Athaliana_NLR_entropy: Shannon entropy calculated per sequence of Athaliana NLRs -egglib_window_stats: Pi and D calculated over 300bp windows, 75bp step of all NLRs -popgen_per_domain: Pi, D, PiS, and PiN calculated by domain of all NLRs -positive_selection: proportion of sites under positive selection estimated by MEME and FEL at a posterior probability > 0.95, corrected for multiple hypothesis testing -nlr_aa_annotation: alignment position based annotation of domains -nlrome_IDs.txt: IDs of accessions used to make VCF files for whole genome popgen analysis -The CHH, CHG, and CG bigwig files -Simulated RNAseq reads generated using Polyester -iTOL annotation files