Electrostatic Analysis of Gap Junction Channels.
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https://figshare.com/articles/dataset/_The_First_Extracellular_Domain_Plays_an_Important_Role_in_Unitary_Channel_Conductance_of_Cx50_Gap_Junction_Channels_/1615409
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The homology model of the Cx50 gap junction channel is supplied as a PDB file. This file can be used to generate a three dimensional map of the electrostatic potential using the “Advanced Poisson-Boltzmann Solver” (APBS) [33] that is integrated into the molecular graphics program "PyMol”. Output from this program is the “pymol-generated.dx” file that contains electrostatic potentials at defined grid points. The supplemental file “potential.net” script can be processed by OpenDX and will produce a graphical output along with a table (z-data) containing electrostatic potentials along the z-axis. To run the “potential.net” script, replace three instances of "PATH" with your working directory that contains the appropriate pymol-generated.dx file. Data available from the Dryad Digital Repository: http://dx.doi.org/10.5061/dryad.98d35. (NET)
创建时间：
2016-10-31
