OmicsBridge

These are the datasets required for OmicsBridge. To use OmicsBridge, download both 00_Expression_data_all.tar.gz and 00_Clinical_dataset.tar.gz . After downloading, uncompress these files and place them in the same folder as the OmicsBridge source code. The source code of OmicsBridge is available from here. The 00_Expression_data_all folder contains the example dataset and includes the following four subfolders: CXCL10_LOF_CRISPR_screeningContains the result from the CXCL10 LOF CRISPR screening, analysed by MaGECK. STK11KO_RNAseq Contains results from the STK11 KO RNAseq data, including: A normalised read count table Result files from the DEG analysis. THP1_data_from_GSE201376Contains the analysis results from THP1 cells treated with IFNg, retrieved from GSE201376. This folder includes: A normalised read count table from RANseq A normalised read count table from ATACseq Bam/Bigwig/Bed files from ATACseq scRNA_data Contains rds files of the scRNAseq data analysed by Seurat, sourced from two public datasets. GSE116256 for AML scRNA GSE148071 for lung cancer scRNA. The 00_Clinical_dataset folder includes TCGA data for 34 cancer types, formatted specifically for use with OmicsBridge.