Ortholog data from the tuatara genome project
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资源简介：
This record contains orthology predictions based on the Maker gene annotation<br>
of the tuatara (Sphenodon punctatus) and a set of 25 other species, using the<br>
Ensembl methodology.
See http://doi.org/10.5281/zenodo.1489354 for the Maker annotation in GFF<br>
format.
The files all_trees.emf.gz and all_homologies.tsv.gz contain the phylogenetic<br>
trees (all_trees.emf.gz, in the EMF alignment format) and the derived pairwise<br>
orthologies and paralogies (all_homologies.tsv.gz, in tabular format).
From the phylogenetic trees, sets of 1-to-1 orthologues across all 26 species<br>
were extracted (pure_one2one_orthologies.txt). Sets of orthologues that span<br>
all the species but include paralogues were reduced to 1 copy per species<br>
using gene order conservation and sequence similarity. This extra dataset is<br>
available in promoted_one2one_orthologies.txt
The main Ensembl entry point for tuatara is:<br>
http://www.ensembl.org/Sphenodon_punctatus/
This work is supported by Ngatiwai iwi, Allan Wilson Centre, University of<br>
Otago, New Zealand Genomics Limited, Illumina, National eScience<br>
Infrastructure (NeSI NZ).
提供机构：
Zenodo
创建时间：
2019-01-23
